Episode 1
Approximately three months after the events of the season one finale, the U.S.S. Cerritos is dispatched on a mission where it ends up in a sci-fi event resulting in "strange energy," which Commander Ransom inadvertently absorbs.
Episode 2
Our Lower Deckers have trouble bonding with Ensign Jet Manhaver, who has been assigned Boimler’s bunk and shift duties. Meanwhile, we get a glimpse of Boimler’s life on the U.S.S. Titan, which is more intense than he thought it would be.
Episode 3
Assigned a special task by Dr. T'Ana, Tendi enlists Mariner for help. On the U.S.S. Cerritos, Rutherford is consumed by a bridge crew mystery.
Episode 4
The U.S.S. Cerritos is dispatched to a planet to investigate an unexplained sighting of a dangerous Mugato.
Episode 5
Mariner and Boimler try to track down the location of a legendary Starfleet party while the bridge crew deals with an insecure alien diplomat.
Episode 6
Anomaly consolidation day on the U.S.S. Cerritos leaves the Lower Deckers with mixed emotions. Captain Freeman attempts to negotiate peace on the Pakled home world.
Episode 7
Mariner and Boimler are stranded on an uninhabited planet with a sentient computer. On the Cerritos, Lt. Commander Billups must prove his engineering abilities to an old adversary.
Episode 8
A consultant arrives on the U.S.S. Cerritos to run drills that require the lower deckers and bridge crew to swap duties.
Episode 9
Boimler tries to find a friend from the bridge, while the crew of the USS Cerritos has free time during a long warp trip.
Episode 10
In the season two finale, the U.S.S. Cerritos is tasked to aid another class starship on a first contact mission.